Detailed information of SNP:
|
SNP ID:
sf0323898479(Gbrowse)
Chromosome: chr03 Position: 23898479 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.93% | 8.07% |
| All Indica | 793 | 85.88% | 14.12% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 77.69% | 22.31% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323898479 | G->A | LOC_Os03g42860(LOC_Os03g42860.1) | Non-Synonymous SNP |