Detailed information of SNP:
|
SNP ID:
sf0323938289(Gbrowse)
Chromosome: chr03 Position: 23938289 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.78% | 5.22% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323938289 | G->A | LOC_Os03g42930(LOC_Os03g42930.1) | INTRON |