Detailed information of SNP:
|
SNP ID:
sf0323944123(Gbrowse)
Chromosome: chr03 Position: 23944123 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 54.22% | 45.78% |
| All Indica | 789 | 93.79% | 6.21% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 369 | 95.93% | 4.07% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323944123 | C->T | INTERGENIC | None |