Detailed information of SNP:
|
SNP ID:
sf0323945031(Gbrowse)
Chromosome: chr03 Position: 23945031 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 93.33% | 6.67% |
| All Indica | 775 | 88.52% | 11.48% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 94.21% | 5.79% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 202 | 90.10% | 9.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323945031 | C->T | INTERGENIC | None |