Detailed information of SNP:



SNP ID: sf0323945031(Gbrowse)

Chromosome: chr03

Position: 23945031
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1395 93.33% 6.67%
All Indica775 88.52% 11.48%
All Japonica497 99.80% 0.20%
Aus67 98.51% 1.49%
Indica I363 94.21% 5.79%
Indica II210 77.14% 22.86%
Indica Intermediate202 90.10% 9.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0323945031 C->T INTERGENIC None