Detailed information of SNP:
|
SNP ID:
sf0323973251(Gbrowse)
Chromosome: chr03 Position: 23973251 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1294 | 98.45% | 1.55% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 375 | 94.67% | 5.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 92.22% | 7.78% |
| Tropical Japonica | 62 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323973251 | C->T | INTERGENIC | None |