Detailed information of SNP:
|
SNP ID:
sf0323980790(Gbrowse)
Chromosome: chr03 Position: 23980790 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1234 | 97.65% | 2.35% |
| All Indica | 670 | 96.27% | 3.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 17 | 82.35% | 17.65% |
| Indica I | 315 | 97.46% | 2.54% |
| Indica II | 179 | 96.09% | 3.91% |
| Indica Intermediate | 176 | 94.32% | 5.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323980790 | G->A | INTERGENIC | None |