Detailed information of SNP:
|
SNP ID:
sf0323986149(Gbrowse)
Chromosome: chr03 Position: 23986149 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 77.73% | 22.27% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 372 | 46.77% | 53.23% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 233 | 36.48% | 63.52% |
| Tropical Japonica | 83 | 73.49% | 26.51% |
| Japonica Intermediate | 56 | 50.00% | 50.00% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323986149 | A->T | INTERGENIC | None |