Detailed information of SNP:
|
SNP ID:
sf0323993883(Gbrowse)
Chromosome: chr03 Position: 23993883 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323993883 | T->C | LOC_Os03g43010(LOC_Os03g43010.1) | INTRON |