Detailed information of SNP:
|
SNP ID:
sf0324012622(Gbrowse)
Chromosome: chr03 Position: 24012622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 89.73% | 10.27% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 41.67% | 58.33% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324012622 | C->T | INTERGENIC | None |