Detailed information of SNP:
|
SNP ID:
sf0324019850(Gbrowse)
Chromosome: chr03 Position: 24019850 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 82.33% | 17.67% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 439 | 49.89% | 50.11% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 284 | 61.62% | 38.38% |
| Tropical Japonica | 91 | 18.68% | 81.32% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324019850 | A->T | LOC_Os03g43060(LOC_Os03g43060.1) | INTRON |