Detailed information of SNP:
|
SNP ID:
sf0324079546(Gbrowse)
Chromosome: chr03 Position: 24079546 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1286 | 54.59% | 45.41% |
| All Indica | 674 | 24.48% | 75.52% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 313 | 19.81% | 80.19% |
| Indica II | 180 | 32.78% | 67.22% |
| Indica Intermediate | 181 | 24.31% | 75.69% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324079546 | T->C | LOC_Os03g43160(LOC_Os03g43160.1) | Synonymous |