Detailed information of SNP:
|
SNP ID:
sf0324079957(Gbrowse)
Chromosome: chr03 Position: 24079957 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.70% | 4.30% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324079957 | C->T | LOC_Os03g43160(LOC_Os03g43160.1) | Non-Synonymous SNP |