Detailed information of SNP:
|
SNP ID:
sf0324081862(Gbrowse)
Chromosome: chr03 Position: 24081862 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 50.04% | 49.96% |
| All Indica | 779 | 14.89% | 85.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 362 | 13.81% | 86.19% |
| Indica II | 207 | 16.43% | 83.57% |
| Indica Intermediate | 210 | 15.24% | 84.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324081862 | C->A | INTERGENIC | None |