Detailed information of SNP:
|
SNP ID:
sf0324083398(Gbrowse)
Chromosome: chr03 Position: 24083398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 95.44% | 4.56% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 481 | 87.53% | 12.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 85 | 56.47% | 43.53% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324083398 | G->A | LOC_Os03g43180(LOC_Os03g43180.1) | Synonymous |