Detailed information of SNP:
|
SNP ID:
sf0324093237(Gbrowse)
Chromosome: chr03 Position: 24093237 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 94.38% | 5.62% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 420 | 82.86% | 17.14% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 279 | 74.55% | 25.45% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324093237 | T->A | INTERGENIC | None |