Detailed information of SNP:
|
SNP ID:
sf0324093710(Gbrowse)
Chromosome: chr03 Position: 24093710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 51.02% | 48.98% |
| All Indica | 762 | 88.06% | 11.94% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 360 | 87.22% | 12.78% |
| Indica II | 199 | 85.93% | 14.07% |
| Indica Intermediate | 203 | 91.63% | 8.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 35.14% | 64.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324093710 | T->C | LOC_Os03g43210(LOC_Os03g43210.1) | Synonymous |