Detailed information of SNP:
|
SNP ID:
sf0324095398(Gbrowse)
Chromosome: chr03 Position: 24095398 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 51.62% | 48.38% |
| All Indica | 775 | 88.52% | 11.48% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 366 | 88.52% | 11.48% |
| Indica II | 204 | 90.20% | 9.80% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324095398 | A->T | LOC_Os03g43210(LOC_Os03g43210.1) | INTRON |