Detailed information of SNP:
|
SNP ID:
sf0324097886(Gbrowse)
Chromosome: chr03 Position: 24097886 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 57.60% | 42.40% |
| All Indica | 749 | 25.90% | 74.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 346 | 29.19% | 70.81% |
| Indica II | 202 | 21.78% | 78.22% |
| Indica Intermediate | 201 | 24.38% | 75.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324097886 | C->T | LOC_Os03g43220(LOC_Os03g43220.1) | Synonymous |