Detailed information of SNP:
|
SNP ID:
sf0324099012(Gbrowse)
Chromosome: chr03 Position: 24099012 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 50.33% | 49.67% |
| All Indica | 763 | 86.50% | 13.50% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 350 | 87.14% | 12.86% |
| Indica II | 205 | 87.32% | 12.68% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324099012 | A->G | LOC_Os03g43220(LOC_Os03g43220.1) | INTRON |