Detailed information of SNP:
|
SNP ID:
sf0324099711(Gbrowse)
Chromosome: chr03 Position: 24099711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 68.82% | 31.18% |
| All Indica | 732 | 43.85% | 56.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 335 | 46.57% | 53.43% |
| Indica II | 202 | 38.61% | 61.39% |
| Indica Intermediate | 195 | 44.62% | 55.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324099711 | G->A | LOC_Os03g43220(LOC_Os03g43220.1) | Synonymous |