Detailed information of SNP:
|
SNP ID:
sf0324103772(Gbrowse)
Chromosome: chr03 Position: 24103772 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 53.39% | 46.61% |
| All Indica | 787 | 19.19% | 80.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 371 | 15.36% | 84.64% |
| Indica II | 206 | 30.10% | 69.90% |
| Indica Intermediate | 210 | 15.24% | 84.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324103772 | C->A | LOC_Os03g43220(LOC_Os03g43220.1) | Non-Synonymous SNP |