Detailed information of SNP:



SNP ID: sf0324114738(Gbrowse)

Chromosome: chr03

Position: 24114738
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 97.22% 2.78%
All Indica786 95.67% 4.33%
All Japonica496 99.60% 0.40%
Aus66 98.48% 1.52%
Indica I369 94.31% 5.69%
Indica II208 97.60% 2.40%
Indica Intermediate209 96.17% 3.83%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0324114738 C->T LOC_Os03g43250(LOC_Os03g43250.1) Synonymous