Detailed information of SNP:
|
SNP ID:
sf0324114738(Gbrowse)
Chromosome: chr03 Position: 24114738 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.22% | 2.78% |
| All Indica | 786 | 95.67% | 4.33% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324114738 | C->T | LOC_Os03g43250(LOC_Os03g43250.1) | Synonymous |