Detailed information of SNP:
|
SNP ID:
sf0324115008(Gbrowse)
Chromosome: chr03 Position: 24115008 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1349 | 60.56% | 39.44% |
| All Indica | 732 | 34.43% | 65.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 327 | 42.81% | 57.19% |
| Indica II | 205 | 20.49% | 79.51% |
| Indica Intermediate | 200 | 35.00% | 65.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324115008 | A->G | LOC_Os03g43250(LOC_Os03g43250.1) | Synonymous |