Detailed information of SNP:
|
SNP ID:
sf0324121043(Gbrowse)
Chromosome: chr03 Position: 24121043 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 92.46% | 7.54% |
| All Indica | 764 | 86.91% | 13.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 351 | 81.77% | 18.23% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 201 | 83.58% | 16.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324121043 | C->T | LOC_Os03g43270(LOC_Os03g43270.1) | Non-Synonymous SNP |