Detailed information of SNP:
|
SNP ID:
sf0324200653(Gbrowse)
Chromosome: chr03 Position: 24200653 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1290 | 97.29% | 2.71% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 374 | 90.91% | 9.09% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 86.96% | 13.04% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 98.18% | 1.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324200653 | A->C | INTERGENIC | None |