Detailed information of SNP:
|
SNP ID:
sf0324203485(Gbrowse)
Chromosome: chr03 Position: 24203485 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 94.83% | 5.17% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 451 | 86.03% | 13.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 291 | 79.73% | 20.27% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324203485 | T->C | INTERGENIC | None |