Detailed information of SNP:
|
SNP ID:
sf0324208058(Gbrowse)
Chromosome: chr03 Position: 24208058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 71.25% | 28.75% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 493 | 29.82% | 70.18% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 42.04% | 57.96% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324208058 | C->T | INTERGENIC | None |