Detailed information of SNP:
|
SNP ID:
sf0324226780(Gbrowse)
Chromosome: chr03 Position: 24226780 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 73.84% | 26.16% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 482 | 30.50% | 69.50% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 324 | 39.81% | 60.19% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 64 | 15.62% | 84.38% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324226780 | G->A | INTERGENIC | None |