Detailed information of SNP:
|
SNP ID:
sf0324234125(Gbrowse)
Chromosome: chr03 Position: 24234125 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1286 | 77.99% | 22.01% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 374 | 30.48% | 69.52% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 251 | 9.16% | 90.84% |
| Tropical Japonica | 70 | 85.71% | 14.29% |
| Japonica Intermediate | 53 | 58.49% | 41.51% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324234125 | A->G | INTERGENIC | None |