Detailed information of SNP:
|
SNP ID:
sf0324317174(Gbrowse)
Chromosome: chr03 Position: 24317174 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1304 | 93.33% | 6.67% |
| All Indica | 692 | 88.73% | 11.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 88.14% | 11.86% |
| Indica I | 317 | 88.96% | 11.04% |
| Indica II | 189 | 88.36% | 11.64% |
| Indica Intermediate | 186 | 88.71% | 11.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324317174 | A->C | LOC_Os03g43550(LOC_Os03g43550.1) | INTRON |