Detailed information of SNP:
|
SNP ID:
sf0324325558(Gbrowse)
Chromosome: chr03 Position: 24325558 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 94.34% | 5.66% |
| All Indica | 720 | 90.28% | 9.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 54 | 94.44% | 5.56% |
| Indica I | 347 | 91.35% | 8.65% |
| Indica II | 182 | 90.11% | 9.89% |
| Indica Intermediate | 191 | 88.48% | 11.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324325558 | C->T | LOC_Os03g43560(LOC_Os03g43560.1) | INTRON |