Detailed information of SNP:
|
SNP ID:
sf0324326916(Gbrowse)
Chromosome: chr03 Position: 24326916 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 80.94% | 19.06% |
| All Indica | 792 | 67.42% | 32.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 56.99% | 43.01% |
| Indica II | 211 | 79.62% | 20.38% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324326916 | C->T | INTERGENIC | None |