Detailed information of SNP:
|
SNP ID:
sf0324372474(Gbrowse)
Chromosome: chr03 Position: 24372474 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.68% | 39.32% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324372474 | T->C | LOC_Os03g43610(LOC_Os03g43610.1) | Non-Synonymous SNP |