Detailed information of SNP:
|
SNP ID:
sf0324377594(Gbrowse)
Chromosome: chr03 Position: 24377594 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 59.47% | 40.53% |
| All Indica | 777 | 96.65% | 3.35% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 203 | 96.06% | 3.94% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324377594 | T->G | INTERGENIC | None |