Detailed information of SNP:
|
SNP ID:
sf0324407183(Gbrowse)
Chromosome: chr03 Position: 24407183 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.28% | 43.72% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324407183 | C->T | INTERGENIC | None |