Detailed information of SNP:
|
SNP ID:
sf0324459736(Gbrowse)
Chromosome: chr03 Position: 24459736 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.43% | 47.57% |
| All Indica | 799 | 25.41% | 74.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 37.87% | 62.13% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324459736 | C->T | LOC_Os03g43730(LOC_Os03g43730.1) | Synonymous |