Detailed information of SNP:
|
SNP ID:
sf0324571137(Gbrowse)
Chromosome: chr03 Position: 24571137 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.58% | 47.42% |
| All Indica | 799 | 25.66% | 74.34% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324571137 | C->T | INTERGENIC | None |