Detailed information of SNP:
|
SNP ID:
sf0324584892(Gbrowse)
Chromosome: chr03 Position: 24584892 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.55% | 4.45% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324584892 | G->T | INTERGENIC | None |