Detailed information of SNP:
|
SNP ID:
sf0324610677(Gbrowse)
Chromosome: chr03 Position: 24610677 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324610677 | G->A | INTERGENIC | None |