Detailed information of SNP:
|
SNP ID:
sf0324611280(Gbrowse)
Chromosome: chr03 Position: 24611280 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324611280 | T->C | INTERGENIC | None |