Detailed information of SNP:
|
SNP ID:
sf0324613858(Gbrowse)
Chromosome: chr03 Position: 24613858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 797 | 35.38% | 64.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324613858 | C->T | INTERGENIC | None |