Detailed information of SNP:
|
SNP ID:
sf0324645561(Gbrowse)
Chromosome: chr03 Position: 24645561 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1233 | 92.94% | 7.06% |
| All Indica | 750 | 94.80% | 5.20% |
| All Japonica | 364 | 87.64% | 12.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 90.35% | 9.65% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 197 | 97.46% | 2.54% |
| Temperate Japonica | 242 | 93.39% | 6.61% |
| Tropical Japonica | 73 | 91.78% | 8.22% |
| Japonica Intermediate | 49 | 53.06% | 46.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324645561 | G->T | INTERGENIC | None |