Detailed information of SNP:
|
SNP ID:
sf0324675332(Gbrowse)
Chromosome: chr03 Position: 24675332 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 797 | 25.60% | 74.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 209 | 31.10% | 68.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324675332 | C->T | INTERGENIC | None |