Detailed information of SNP:
|
SNP ID:
sf0324681796(Gbrowse)
Chromosome: chr03 Position: 24681796 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 75.78% | 24.22% |
| All Indica | 797 | 64.24% | 35.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 212 | 24.53% | 75.47% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324681796 | A->G | INTERGENIC | None |