Detailed information of SNP:
|
SNP ID:
sf0324690390(Gbrowse)
Chromosome: chr03 Position: 24690390 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.81% | 18.19% |
| All Indica | 798 | 74.19% | 25.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324690390 | G->A | INTERGENIC | None |