Detailed information of SNP:
|
SNP ID:
sf0324746219(Gbrowse)
Chromosome: chr03 Position: 24746219 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 89.25% | 10.75% |
| All Indica | 784 | 87.88% | 12.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 370 | 83.78% | 16.22% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324746219 | T->C | INTERGENIC | None |