Detailed information of SNP:
|
SNP ID:
sf0324763439(Gbrowse)
Chromosome: chr03 Position: 24763439 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 87.87% | 12.13% |
| All Indica | 783 | 95.91% | 4.09% |
| All Japonica | 448 | 73.44% | 26.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 203 | 87.19% | 12.81% |
| Temperate Japonica | 296 | 75.34% | 24.66% |
| Tropical Japonica | 87 | 64.37% | 35.63% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324763439 | G->T | INTERGENIC | None |