Detailed information of SNP:
|
SNP ID:
sf0324793757(Gbrowse)
Chromosome: chr03 Position: 24793757 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 94.38% | 5.62% |
| All Indica | 776 | 97.29% | 2.71% |
| All Japonica | 440 | 88.18% | 11.82% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 356 | 99.44% | 0.56% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 302 | 83.11% | 16.89% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324793757 | G->A | INTERGENIC | None |