Detailed information of SNP:
|
SNP ID:
sf0324806439(Gbrowse)
Chromosome: chr03 Position: 24806439 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 72.02% | 27.98% |
| All Indica | 778 | 53.47% | 46.53% |
| All Japonica | 483 | 99.59% | 0.41% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 359 | 75.21% | 24.79% |
| Indica II | 212 | 14.62% | 85.38% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 326 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324806439 | C->T | INTERGENIC | None |