Detailed information of SNP:
|
SNP ID:
sf0324808303(Gbrowse)
Chromosome: chr03 Position: 24808303 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.78% | 35.22% |
| All Indica | 799 | 46.43% | 53.57% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324808303 | C->A | LOC_Os03g44150(LOC_Os03g44150.1) | UTR_3_PRIME |